Sequence Alignment Tool

Perform pairwise sequence alignment online using Needleman-Wunsch (global) or Smith-Waterman (local) algorithms. Customizable scoring — free bioinformatics tool

Sequence Input

Sequence 1

Sequence 2

Parameters

Algorithm:Needleman-Wunsch (Global)Smith-Waterman (Local)

Match Score

Mismatch Penalty

Gap Penalty

Alignment ResultScore: 1

Seq1: AGTACGCA
        ||.|| 
Seq2: --TATGC-

Match (|)Mismatch (.)Gap (-)

Matches: 4 | Mismatches: 1 | Gaps: 3